What Are the Biggest Challenges in Filling Out a Tax Return?

The biggest challenges in filling out a tax return are the places where one wrong choice quietly changes the whole result: picking a filing status you don’t actually qualify for, missing a 1099 the IRS already has a copy of, guessing wrong on the standard-deduction-versus-itemizing math, forgetting that self-employment income carries its own separate tax, and confusing an extension to file with an extension to pay. None of these are exotic. They come up on ordinary returns, and each one has a specific rule you can check before you sign.

Picking the Right Filing Status

Filing status controls your tax brackets, your standard deduction, and your eligibility for several credits. The IRS recognizes five: Single, Married Filing Jointly, Married Filing Separately, Head of Household, and Qualifying Surviving Spouse.1Internal Revenue Service. Filing Status Get this wrong and every downstream number is wrong too.

Head of Household is the one people most often claim incorrectly. The 2026 standard deduction for Head of Household is $24,150, compared to $16,100 for Single, so the pull is obvious. To qualify, you must be unmarried or considered unmarried on the last day of the year, you must have paid more than half the cost of keeping up your home, and a qualifying person must have lived with you for more than half the year.1Internal Revenue Service. Filing Status People who separated during the year often assume they meet the test when they don’t.

Married couples who file jointly get the largest standard deduction ($32,200 for 2026) and the widest brackets, but joint filing makes both spouses legally responsible for the entire tax bill, including any additional tax the IRS later assesses. A divorce decree assigning taxes to your ex-spouse does not change your liability to the IRS.2Internal Revenue Service. Instructions for Form 8857

Who Counts as a Dependent

The dependent rules split into two categories. A qualifying child must meet tests for relationship, age (under 19, or under 24 if a full-time student), residency (living with you more than half the year), and support (the child cannot have provided more than half their own support). A qualifying relative must have gross income below $5,050 and receive more than half their support from you.3Internal Revenue Service. About Dependents

Divorced and separated parents run into trouble when both try to claim the same child. Tie-breaker rules generally give the claim to the parent with whom the child lived longer during the year, or to the parent with the higher income if residence was equal.4Office of the Law Revision Counsel. 26 US Code 152 – Dependent Defined A non-custodial parent can only claim child-related credits like the Child Tax Credit if the custodial parent signs Form 8332 releasing the claim.5Internal Revenue Service. About Form 8332, Release/Revocation of Release of Claim to Exemption for Child by Custodial Parent Without that signed form attached, the IRS will disallow the credit and assess additional tax plus interest.

Whether You Have to File at All

Not everyone is required to file. For tax year 2025, the gross income thresholds that trigger a filing requirement are:

  • Single (under 65): $15,750
  • Head of Household (under 65): $23,625
  • Married Filing Jointly (both under 65): $31,500
  • Married Filing Separately: $5
  • Qualifying Surviving Spouse: $31,500

Those thresholds rise if you are 65 or older, and anyone with net self-employment earnings above $400 must file regardless of income.6Internal Revenue Service. Check if You Need to File a Tax Return

Even below these thresholds, file if taxes were withheld from your pay or if you qualify for refundable credits like the Earned Income Tax Credit. That money doesn’t come back to you unless you file.

Catching Every Piece of Income

This is where returns start to fall apart. A single W-2 is easy. Add freelance income (Form 1099-NEC), dividends (1099-DIV), partnership distributions (Schedule K-1), and retirement withdrawals (1099-R), and just keeping track of what arrived and what didn’t becomes a real job.7Internal Revenue Service. Instructions for Forms 1099-MISC and 1099-NEC Forms trickle in through January and February, and K-1s often show up in March, close to the deadline.

The IRS receives copies of every information return sent to you. Its Automated Underreporter program matches those against your return, and any mismatch generates a CP2000 notice proposing additional tax.8Internal Revenue Service. Topic No. 652 – Notice of Underreported Income CP2000 Ignoring the notice leads to an automatic assessment.

Investment Sales and Cost Basis

Form 1099-B is one of the trickiest documents on a return. Your broker reports the gross proceeds from a sale, but you are responsible for the cost basis that determines your actual gain or loss. Shares bought over years through a dividend reinvestment plan, splits, and corporate reorganizations can make this genuinely hard to reconstruct.9Internal Revenue Service. About Form 1099-B, Proceeds From Broker and Barter Exchange Transactions Inherited securities get a stepped-up basis equal to the fair market value on the date of the prior owner’s death, which you have to know. Omit the basis entirely and the IRS treats it as zero, taxing the full sale amount as gain.

Early Retirement Withdrawals

Money pulled from a traditional IRA or 401(k) before age 59½ triggers a 10% additional tax on top of the ordinary income tax you already owe on the distribution. SIMPLE IRA withdrawals within the first two years of participation face a 25% penalty.10Internal Revenue Service. Retirement Topics – Exceptions to Tax on Early Distributions

Several exceptions exist, but your 1099-R may not reflect them. Unreimbursed medical expenses exceeding 7.5% of AGI, a first-time home purchase (up to $10,000 from an IRA), or separation from service in the year you turn 55 can each qualify. You have to claim the exception on Form 5329. Miss that step and you pay a penalty you don’t owe.10Internal Revenue Service. Retirement Topics – Exceptions to Tax on Early Distributions

Digital Assets

Every Form 1040 now includes a mandatory yes-or-no question about digital assets, which covers cryptocurrency, NFTs, and stablecoins. Swapping one cryptocurrency for another, paying for something with Bitcoin, or disposing of shares in an ETF that holds digital assets all count as taxable events requiring a “yes.”11Internal Revenue Service. Determine How to Answer the Digital Asset Question If you answer yes, you report gains and losses on Form 8949, and the cost-basis problem is often worse than with stocks because crypto platforms keep inconsistent purchase records. Buying digital assets with dollars and holding them requires a “no,” but the line trips people up.12Internal Revenue Service. Understanding Digital Asset Reporting and Tax Requirements

Standard Deduction or Itemize

For 2026, the standard deduction is $16,100 for Single filers, $32,200 for Married Filing Jointly, and $24,150 for Head of Household. Unless your itemized deductions exceed those numbers, itemizing produces a worse result.13Internal Revenue Service. Deductions for Individuals – The Difference Between Standard and Itemized Deductions Plenty of people spend hours collecting receipts only to find the standard deduction wins anyway.

If you do itemize, watch the thresholds. Medical and dental expenses are deductible only to the extent they exceed 7.5% of your adjusted gross income. Someone with $80,000 AGI and $7,000 of medical bills can deduct only $1,000.14Internal Revenue Service. Topic No. 502, Medical and Dental Expenses

The state and local tax (SALT) deduction is capped at $40,400 for most filers in 2026 ($20,200 for Married Filing Separately), up from the $10,000 cap that applied from 2018 through 2024. The higher cap phases out once your modified AGI exceeds $505,000 ($252,500 for Married Filing Separately), shrinking by 30 cents for every dollar above that threshold until it hits a $10,000 floor.15Internal Revenue Service. Topic No. 503, Deductible Taxes In a high-tax state, where you land on that phase-out determines whether itemizing pays off.

Credits That Phase Out or Compete

Credits reduce your tax bill dollar for dollar, but the common ones phase out as income rises, and some cannot be combined.

The Child Tax Credit provides up to $2,200 per qualifying child for 2026. Up to $1,700 per child is refundable through the Additional Child Tax Credit, meaning you can receive it even if you owe no federal tax, as long as you have at least $2,500 in earned income.16Internal Revenue Service. Child Tax Credit The refundable portion depends on a formula tied to earned income that catches many filers off guard.

The Earned Income Tax Credit varies with filing status, earned income, and number of qualifying children. For 2026, your investment income must be $12,200 or less to qualify.17Internal Revenue Service. Earned Income and Earned Income Tax Credit (EITC) Tables The EITC has one of the highest error rates of any credit, and the IRS scrutinizes claims closely.

Education benefits create their own confusion. Two credits are available: the American Opportunity Tax Credit and the Lifetime Learning Credit. You cannot claim both for the same student in the same year, and each has different income limits, maximum amounts, and rules about which expenses qualify.18Internal Revenue Service. Education Credits AOTC and LLC Picking the wrong one leaves money on the table. The older tuition and fees deduction expired after 2020.19Internal Revenue Service. About Form 8917, Tuition and Fees Deduction

Self-Employment Tax

Earn more than $400 from freelance work, a gig platform, or a business you run, and you owe self-employment tax on top of regular income tax. The rate is 15.3%, covering the Social Security portion (12.4%) and the Medicare portion (2.9%). As an employee, your employer pays half; as a self-employed person, you pay both halves.20Internal Revenue Service. Self-Employment Tax (Social Security and Medicare Taxes)

You do get to deduct half the self-employment tax as an adjustment to income on Schedule 1, lowering your AGI. The calculation runs through Schedule SE. The Social Security portion applies only up to an annually adjusted wage base; the Medicare portion has no cap. First-time freelancers often don’t realize this tax exists until they see the bill.

Deadlines, Extensions, and Estimated Payments

For tax year 2025, the filing deadline is April 15, 2026.21Internal Revenue Service. IRS Opens 2026 Filing Season Filing Form 4868 by that date gives you an automatic six-month extension to October 15, 2026.22Internal Revenue Service. Application for Automatic Extension of Time to File US Individual Income Tax Return

An extension to file is not an extension to pay. Interest and possibly the failure-to-pay penalty still run on any amount not paid by April 15. When you request an extension, you are expected to estimate your liability and pay as much as you can with the form.23Internal Revenue Service. Taxpayers Who Need More Time to File a Federal Tax Return Should Request an Extension

If you have significant income that isn’t subject to withholding, quarterly estimated payments are generally required. You can avoid the underpayment penalty if your return shows you owe less than $1,000, or if you paid at least 90% of the current year’s tax or 100% of the prior year’s tax, whichever is smaller. If your prior-year AGI exceeded $150,000, the safe harbor rises to 110% of the prior year’s tax.24Internal Revenue Service. Underpayment of Estimated Tax by Individuals Penalty New freelancers and retirees with fresh investment income are the ones who most often miss this.

What Penalties Actually Cost

The IRS charges separate penalties for filing late and paying late, and they can stack.

  • Failure-to-file penalty: 5% of the unpaid tax for each month or partial month the return is late, capped at 25%. If the return is more than 60 days late, the minimum penalty is the lesser of $525 or 100% of the tax owed.25Internal Revenue Service. Topic No. 653, IRS Notices and Bills, Penalties and Interest Charges
  • Failure-to-pay penalty: 0.5% of the unpaid tax per month, also capped at 25%. In any month where both apply, the filing penalty drops to 4.5%, keeping the combined rate at 5%.
  • Accuracy-related penalty: 20% of the underpayment attributable to negligence, disregard of IRS rules, or a substantial understatement of income tax. The 20% rate does not stack across categories.26Office of the Law Revision Counsel. 26 USC 6662 – Imposition of Accuracy-Related Penalty on Underpayments

The failure-to-file penalty is ten times larger per month than the failure-to-pay penalty. If you cannot pay, filing on time and paying what you can is far cheaper than waiting until you have the full amount.

Multi-State Filing

Moving during the year, or earning income in a state where you didn’t live, usually means a part-year resident return in each state you lived in and a nonresident return in any state where you earned income without residing. Splitting income correctly between jurisdictions is the hard part, and each state has its own allocation rules.

Some states have reciprocal agreements: you pay income tax only to your state of residence, and your employer withholds for your home state. Reciprocity isn’t automatic; you may need to file an exemption form with your employer to avoid double withholding. Without reciprocity, you generally pay the work state and claim a credit on your home-state return for taxes paid to the other state.

Many states also calculate taxable income differently from the federal government, so a deduction that reduced your federal AGI may not carry over to your state return. A mid-year move sometimes produces three separate returns: federal, and two part-year state returns.

Rejections and Small Procedural Errors

After the substance is right, purely procedural errors still delay processing or bounce a return. A transposed Social Security number or a name that doesn’t match Social Security Administration records will kick an e-filed return back immediately.27Internal Revenue Service. Age, Name or SSN Rejects, Errors, Correction Procedures Recent name changes after marriage are a common culprit; update your name with SSA before filing to avoid the mismatch. Math errors, wrong bank account numbers for direct deposit, and unsigned paper returns are other frequent causes of delay.

How Long to Keep the Records

The general rule is to keep records supporting income, deductions, and credits for at least three years from the date you filed or the return’s due date, whichever is later.28Internal Revenue Service. How Long Should I Keep Records? That matches the IRS’s standard audit window. The window stretches to six years if you omitted more than 25% of your gross income, and there is no time limit at all if you filed a fraudulent return or never filed one.29Office of the Law Revision Counsel. 26 US Code 6501 – Limitations on Assessment and Collection Property records, such as home purchase documents and improvement receipts, should be kept as long as you own the asset and for three years after you report the sale, since you’ll need them to prove your cost basis.